Gene 27530 (Tetrahymena)

27530

Species: Tetrahymena
Alias: 27530, PreTt27530, TTHERM_00355440, 3836.m02336, 37.m00247, 91
External Links: Tetrahymena Genome Database (TGD)
Annotation:

Classification

Group: Other
Family: Ciliate-C7

Sequence

Name Sequence Type Origin Length Description Download
27530.AA Protein None 534 None Fasta, JSON
27530.kin_dom Protein Kinase Domain None 210 None Fasta, JSON
27530.NA RNA None 1605 None Fasta, JSON

Protein domain

Protein domains of 27530.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase 27530.AA Ciliate-C7 76-218 36 3e-39 123.8 In-house 1-146 (164) Show / Hide 
Range on Protein: 76-218
Range on HMM: 1-146/164
Sequence Identity: 36% (54 aa)

FRFLSSDTQGCQISANKKGIENRHIIKGIFSKKNKEDANEL-KNYIDNQIKILKQCSGSPYSIELVNEIEGEEMVYLIFNANK-GTIQKLLEQ-QGGKLS
||||.   ||. . |  .. . |  |||.. .  .   ..  .|   . |.|||||..||| . |....||....||. |  . || . ..|. |  .|.
FRFLGQGQQGLVLLAKDQKTNMRYAIKGVQVRDKQGNIDQDINNQVQQEINILKQCKDSPYVVCLLHQFEGQQFIYLVLNECQGGTLNQIIERNQNKRLN

EFSVIKYSKDIAEGICHAHKNGHFFYHLNLDQIFIDFNNNAVVSAF
| | |||.||||.|. . |...     | .| | ||.|.||||. |
EISAIKYAKDIAQGLYYIHSKNCVVNDLKMDNILIDYNGNAVVCDF
Kinase 27530.AA Ciliate-C7 219-293 12 9.8e-20 60.38 In-house 93-164 (164) Show / Hide 
Range on Protein: 219-293
Range on HMM: 93-164/164
Sequence Identity: 12% (9 aa)

TARDLNLSQENSLFIAPEIEQNSQEQDASDNTKASTSLSKQSDAFSFGCLMISMLLGVTELKRYEKKKEQISEYF
.... .|........|..|.|...............................  ..|......... |.||..|.
RNQNKRLNEISAIKYAKDIAQGLYYIHSKNCVVNDLKMDNILIDYNGNAVVC--DFGLADNLTQKS-KYQINQYM
S_TKc 27530.AA S_TKc 73-335 16 1.4e-09 -36.39 SMART 1-231 (231) Show / Hide 
Range on Protein: 73-335
Range on HMM: 1-231/231
Sequence Identity: 16% (47 aa)

YEEFRFLSSDTQGCQISANKKGIENRHIIKGIFSKKNKEDANELKNYIDNQIKILKQCSGSPYSIELVNEIEGEEMVYLIFNANKG---TIQKLLEQQGG
||  | . . . |.   . .|.   .  || |             . | . |.|||.  . |. . |   ..  . .|...    |   .  ......|.
YEILRKIGKGAFGKVYKCRHKKTGRIVAIKIIK------------EHIRREIQILKK--HHPNIVKLYDVFQD-DHLYMVMEYCDGDLGDLFDYIKKRGR

K-----LSEFSVIKYSKDIAEGICHAHKNGHFFYH-LNLDQIFIDFNNNAVVSAF-TARDLNLSQENSL-----FIAPEIEQNSQEQDASDNTKASTSLS
.     ..|  . .| . |.... . |.. .. .  |  . |..|   .  .. |  || |     ...     ..|||.                 . .
HGLRFPFPE-HARFYMYQICCALEYCHSH-GIIHRDLKPENILLDE--HIKICDFGLARQL-----TTFCGTPWYMAPEVL----------------GYG

K-QSDAFSFGCLMISMLLGVTELKRYEKKKEQISEYFANLSDSSSKKESLYKIISRLTKFDSNERMTIFDSLS-----ELQKMI
|  .|  |.||... || | .          |. . | ..       ...  .|... ..| ..|.|. . |       .   .
KCKCDWWSCGCILYEMLCGYPPFP-------QMQMMFKKIG-----SPEAKDFIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF
Kinase 27530.AA Dicty3 230-273 27 7e-06 15.1 In-house 259-291 (351) Show / Hide 
Range on Protein: 230-273
Range on HMM: 259-291/351
Sequence Identity: 27% (12 aa)

SLFIAPEIEQNSQEQDASDNTKASTSLSKQSDAFSFGCLMISML
.  .||||  |.|             ... || .|.||... |.
IHYMAPEIKLNNQCC-----------ACRKSDIWSLGCTVWEMV
Kinase 27530.AA FNIPK 253-273 52 6e-05 11.91 In-house 345-365 (425) Show / Hide 
Range on Protein: 253-273
Range on HMM: 345-365/425
Sequence Identity: 52% (11 aa)

STSLSKQSDAFSFGCLMISML
|  ||| || ...||.|| |.
SKGLSKKSDIWCLGCTMIEMV