Gene CC1G_12693 (C.cinerea)

CC1G_12693

Species: C.cinerea
Alias: CC1G_12693
External Links:
Annotation:

Classification

Group: Other
Family: FunK1

Sequence

Name Sequence Type Origin Length Description Download
CC1G_12693.AA Protein None 846 None Fasta, JSON
CC1G_12693.NA RNA None 2541 None Fasta, JSON
CC1G_12693.kin_dom Protein Kinase Domain None 439 None Fasta, JSON

Protein domain

Protein domains of CC1G_12693.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase CC1G_12693.AA RTKF 488-516 48 0.000589 8.34 In-house 126-152 (272) Show / Hide 
Range on Protein: 488-516
Range on HMM: 126-152/272
Sequence Identity: 48% (14 aa)

GWVHRDVSAGNILAFRATPDEPWQAKLSD
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GLVHRDVAARNVLVFEDQPR--MYVKLTD