Gene CC1G_14317 (C.cinerea)

CC1G_14317

Species: C.cinerea
Alias: CC1G_14317
External Links:
Annotation:

Classification

Group: Other
Family: FunK1

Sequence

Name Sequence Type Origin Length Description Download
CC1G_14317.AA Protein None 767 None Fasta, JSON
CC1G_14317.NA RNA None 2304 None Fasta, JSON
CC1G_14317.kin_dom Protein Kinase Domain None 457 None Fasta, JSON

Protein domain

Protein domains of CC1G_14317.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase CC1G_14317.AA IKK 546-585 39 6.7e-05 12.9 In-house 136-176 (297) Show / Hide 
Range on Protein: 546-585
Range on HMM: 136-176/297
Sequence Identity: 39% (16 aa)

VHRDISHGNILAF-KEEGVWQVKLSDLEYAKRFPPDSAQTS
|||||  |||  .  |.|    |. |..||.. . |.. .|
VHRDIKPGNIMCQKGEDGKTIYKITDFGYAREWDDDEMFMS
Kinase CC1G_14317.AA RTKF 544-570 44 0.000602 8.31 In-house 126-152 (272) Show / Hide 
Range on Protein: 544-570
Range on HMM: 126-152/272
Sequence Identity: 44% (12 aa)

GWVHRDISHGNILAFKEEGVWQVKLSD
| ||||.   |.| | .    .|||.|
GLVHRDVAARNVLVFEDQPRMYVKLTD
Kinase CC1G_14317.AA TAO 546-601 41 0.000778 8.09 In-house 121-167 (254) Show / Hide 
Range on Protein: 546-601
Range on HMM: 121-167/254
Sequence Identity: 41% (23 aa)

VHRDISHGNILAFKEEGVWQVKLSDLEYAKRFPPDSAQTSSAPKTGTPFFMAHEIL
.||||  ||||   |.|.  |||.|   |    |  |..      |||..|| |..
IHRDIKAGNIL-LTEHGQ--VKLADFGSASMVCP--ANSF----VGTPYWMAPEVI