Gene ABC1-D_b (S.moellendorffii)

ABC1-D_b

Species: S.moellendorffii
Alias: ABC1-D_b
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-D

Sequence

Name Sequence Type Origin Length Description Download
ABC1-D_b.AA Protein None 603 None Fasta, JSON
ABC1-D_b.NA RNA None 1812 None Fasta, JSON

Protein domain

Protein domains of ABC1-D_b.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-D_b.AA ABC1 120-240 42 2e-53 181.89 Pfam 1-126 (126) Show / Hide 
Range on Protein: 120-240
Range on HMM: 1-126/126
Sequence Identity: 42% (55 aa)

EELGCSVDQVFEKFDRDPIAAASLGQVHRAVL--NGEQVVIKIQRPGLKALFDIDLKNLRVIAENLQKIDPK--SDGAKR-DWVAIYDECANVLYQEIDY
||||| ....|. ||. ||||||..|||||.|  .||.|..|.|.||.| ... |..|.|..|. .... |        | |...|.||..  |..|.||
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRR---QRFDLMWIVDEFRKNLPWELDY

NREAANAERFAANFKDL---SYVKVPRIY
 |||.|.|||. ||...   ..|.||..|
RREAKNMERFRENFRHWHRQPWVYVPKVY
Kinase ABC1-D_b.AA ABC1 120-179 40 9.9e-21 75.2 In-house 1-60 (123) Show / Hide 
Range on Protein: 120-179
Range on HMM: 1-60/123
Sequence Identity: 40% (25 aa)

EELGCSVDQVFEKFDRDPIAAASLGQVHRAVLN-GEQVVIKIQRPGLKALFDIDLKNLRVI
..||   . ||. ||  |.||||..|||||.|  |. |. |.| ||... .. |..|....
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVREQIHYDINNMEMV
Kinase ABC1-D_b.AA ABC1-B 120-179 45 9.3e-17 57.91 In-house 1-60 (125) Show / Hide 
Range on Protein: 120-179
Range on HMM: 1-60/125
Sequence Identity: 45% (28 aa)

EELGCSVDQVFEKFDRDPIAAASLGQVHRAVLN-GEQVVIKIQRPGLKALFDIDLKNLRVI
. ||  .. ||. ||  ||||||| |||||.|  || |  |.| | |.. |. |.. ....
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRKQFHYDMMMMELF
Kinase ABC1-D_b.AA ABC1 207-240 41 1.6e-13 49.61 In-house 88-123 (123) Show / Hide 
Range on Protein: 207-240
Range on HMM: 88-123/123
Sequence Identity: 41% (15 aa)

VLYQEIDYNREAANAERFAANFK--DLSYVKVPRIY
.|..|.|.|.||.|||.....||  .  ...||||.
ELPWECDFNNEARNAEKCRQLFKKFHWPFFYVPRIH
Kinase ABC1-D_b.AA ABC1-A 133-177 50 3e-12 38.87 In-house 1-46 (216) Show / Hide 
Range on Protein: 133-177
Range on HMM: 1-46/216
Sequence Identity: 50% (23 aa)

FDRDPIAAASLGQVHRAVL-NGEQVVIKIQRPGLKALFDIDLKNLR
|   | |.|| ||||.|||  |  |..||| || .   | |. ||.
FEEMPFACASIGQVHQAVLKDGREVAVKIQYPGVAESIDSDINNLM
Kinase ABC1-D_b.AA ABC1-B 202-240 40 7.7e-11 36.41 In-house 84-125 (125) Show / Hide 
Range on Protein: 202-240
Range on HMM: 84-125/125
Sequence Identity: 40% (17 aa)

DECANVLYQEIDYNREAANAERFAANFK---DLSYVKVPRIY
||   .|.||.| . || |||. .  ||   .. ...||||.
DEIQKNLPQELDFYNEARNAEKCRQMFKKFKHFDFLYVPRIH
Kinase ABC1-D_b.AA ABC1-C 156-309 31 3.4e-09 24.4 In-house 1-151 (307) Show / Hide 
Range on Protein: 156-309
Range on HMM: 1-151/307
Sequence Identity: 31% (50 aa)

VVIKIQRPGLKALFDIDLKNLRVIAENLQKIDPKSDGAKRDWVA---IYDECANVLYQEIDYNREAANAERFAANFKDLSYVKVPRIYWKYTTPQVLTME
| .|.  ||| |   .||  ... .  |  .     | |  |..   | .|   .. | ||   || | | |  ||.    || |     . |  ||   
VAVKVLHPGLLAQVHMDLLLMKIGSRVLGVL----PGIK--WLSLPEIVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLVET

YVPGIKINKIKALDRLGVDRQR-LARYCVESYLEQILRHGFFHADPHPGNIAVDDFNG
|   . .   .    . || .| .||  .   |  |    | ||| ||||| |   ||
YEESVPVSSYQQAG-IPVDLKRKIARLGINMLLKMIFVDNFVHADLHPGNILVQGANG
Kinase ABC1-D_b.AA ABC1-A 208-261 38 9.1e-09 26.72 In-house 72-125 (216) Show / Hide 
Range on Protein: 208-261
Range on HMM: 72-125/216
Sequence Identity: 38% (21 aa)

LYQEIDYNREAANAERFAANFKDLSYVKVPRIYWKYTTPQVLTMEYVPGIKINK
| .| ||.|||. .  | .  ||   . ||..   |.|. ||||| . |  | .
LHWECDYQREARCMQKFRQLLKDWPFFYVPHVIDEYCTDRVLTMELMYGFPIDQ
Kinase ABC1-D_b.AA ABC1-C 435-462 50 4e-06 14.65 In-house 280-307 (307) Show / Hide 
Range on Protein: 435-462
Range on HMM: 280-307/307
Sequence Identity: 50% (14 aa)

FTFVVRAFSVLDGIGKGLDPYFDISEIA
|  .| |  ||.|.|. |||  || | |
FASIVFAIMVLEGLGRSLDPKLDILEAA