Gene ABC1-E_a (S.moellendorffii)
ABC1-E_a
Species: S.moellendorffii
Alias: ABC1-E_a
External Links:
Annotation:
Sequence
| Name | Sequence Type | Origin | Length | Description | Download |
|---|---|---|---|---|---|
| ABC1-E_a.AA | Protein | None | 832 | None | Fasta, JSON |
| ABC1-E_a.NA | RNA | None | 2499 | None | Fasta, JSON |
Protein domains of ABC1-E_a.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
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| Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
|---|---|---|---|---|---|---|---|---|---|
| ABC1 | ABC1-E_a.AA | ABC1 | 279-398 | 40 | 1.1e-39 | 135.68 | Pfam | 1-126 (126) | Show / Hide |
Range on Protein: 279-398 Range on HMM: 1-126/126 Sequence Identity: 40% (51 aa) KELGQPWTELYSELSPSPIAAASLGQVYKGRIKETGEPVAVKVQRPYVLETVTIDLYIIRKLGLALRKFPQA---TT-DVVGLVDEWAARFFEELDYVNE .|||.|| |...| .. ||||||..||...| | || ||||||.| | .... |.|..| . ....|. . | ...||| . . ..|||| .| EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE GRNGTRFAEMMRQD--LPQVVVPKTY ..| ||.|..| . | | ||| | AKNMERFRENFRHWHRQPWVYVPKVY |
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| Kinase | ABC1-E_a.AA | ABC1 | 279-398 | 29 | 2.4e-22 | 80.59 | In-house | 1-123 (123) | Show / Hide |
Range on Protein: 279-398 Range on HMM: 1-123/123 Sequence Identity: 29% (37 aa) KELGQPWTELYSELSPSPIAAASLGQVYKGRIKETGEPVAVKVQRPYVLETVTIDLYIIRKLGLALRKFPQA----TTDVVGLVDEWAARFFEELDYVNE ..|| .| . ||... |.||||..|| ... |. |. |||||| | | | . |. .. . .. |.. .||| .|.|. || QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKD-GQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNE GRNGTRFAEMMR-QDLPQVVVPKTY .|| ..... . . |...||. . ARNAEKCRQLFKKFHWPFFYVPRIH |
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| Kinase | ABC1-E_a.AA | ABC1-B | 279-398 | 29 | 1e-18 | 65.02 | In-house | 1-125 (125) | Show / Hide |
Range on Protein: 279-398 Range on HMM: 1-125/125 Sequence Identity: 29% (37 aa) KELGQPWTELYSELSPSPIAAASLGQVYKGRIKETGEPVAVKVQRPYVLETVTIDLYIIRKLGLALRKFPQ-----ATTDVVGLVDEWAARFFEELDYVN | || . . .|| .. ||||||| || . .. || |||||| | . . |. .. . .. | . . ..|| .||| | KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHD-GETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYN EGRNGTRFAEMMR--QDLPQVVVPKTY |.|| . ..| . .......||. . EARNAEKCRQMFKKFKHFDFLYVPRIH |
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| Kinase | ABC1-E_a.AA | ABC1-A | 292-322 | 45 | 1e-06 | 19.0 | In-house | 1-30 (216) | Show / Hide |
Range on Protein: 292-322 Range on HMM: 1-30/216 Sequence Identity: 45% (14 aa) LSPSPIAAASLGQVYKGRIKETGEPVAVKVQ . | |.|| ||| ... | | ||||.| FEEMPFACASIGQVHQAVLKD-GREVAVKIQ |
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| APH | ABC1-E_a.AA | APH | 433-472 | 24 | 3.7e-05 | 18.49 | Pfam | 159-203 (248) | Show / Hide |
Range on Protein: 433-472 Range on HMM: 159-203/248 Sequence Identity: 24% (11 aa) VICYLKQLLD-TGLFHADPHPGNLIRT--PD-GKL-AILDFGLMT .. .|..... ... |.| ||||.. . || |.. ...|.. .. LWAWLEAHWPPPCWCHGDFHPGNVMWDPRPDGGRVTGVIDWDDAC |
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