Gene ABC1-F_a (S.moellendorffii)
ABC1-F_a
Species: S.moellendorffii
Alias: ABC1-F_a
External Links:
Annotation:
Sequence
| Name | Sequence Type | Origin | Length | Description | Download |
|---|---|---|---|---|---|
| ABC1-F_a.AA | Protein | None | 412 | None | Fasta, JSON |
| ABC1-F_a.NA | RNA | None | 1236 | None | Fasta, JSON |
Protein domains of ABC1-F_a.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
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| Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
|---|---|---|---|---|---|---|---|---|---|
| ABC1 | ABC1-F_a.AA | ABC1 | 131-249 | 42 | 3.2e-51 | 174.5 | Pfam | 1-126 (126) | Show / Hide |
Range on Protein: 131-249 Range on HMM: 1-126/126 Sequence Identity: 42% (53 aa) SELGVPVDVLFSEITPAPVAAASLGQVYQARLRPSGDTVAVKVQRPGVKATISLDIYILRILAGYARIVGRF----NTDLQAVVDEWASSLFREMDYEAE .||| |.. .|.|. . |.||||..||..|||. .| .||||||.|||| ....|||..|..| ... . . ||...||| ...|..|.||. | EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE ARNGERFRRLFGDI---PDLTIPKMY |.| ||||..| .. |....|| | AKNMERFRENFRHWHRQPWVYVPKVY |
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| Kinase | ABC1-F_a.AA | ABC1 | 131-249 | 36 | 9.3e-29 | 101.87 | In-house | 1-123 (123) | Show / Hide |
Range on Protein: 131-249 Range on HMM: 1-123/123 Sequence Identity: 36% (46 aa) SELGVPVDVLFSEITPAPVAAASLGQVYQARLRPSGDTVAVKVQRPGVKATISLDIYILRILAGYARIVGRFN------TDLQAVVDEWASSLFREMDYE ..|| . . ||| . |.||||..|| .|.|. | ||||||| |||.. |. || .... .. .. | | .||| ..| | |.. QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKD-GQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWF--FPGPDFKWFFLMWFVDEFQKELPWECDFN AEARNGERFRRLFG--DIPDLTIPKMY |||| |..|.|| . |....|. . NEARNAEKCRQLFKKFHWPFFYVPRIH |
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| Kinase | ABC1-F_a.AA | ABC1-B | 131-249 | 31 | 8.4e-24 | 83.52 | In-house | 1-125 (125) | Show / Hide |
Range on Protein: 131-249 Range on HMM: 1-125/125 Sequence Identity: 31% (40 aa) SELGVPVDVLFSEITPAPVAAASLGQVYQARLRPSGDTVAVKVQRPGVKATISLDIYILRILAGYARIVGRF-------NTDLQAVVDEWASSLFREMDY . || ... ||| . |.||||| || | | | ||||||| | ... ...|. .. . . . | . . ...|| ..| | | KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHD-GETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWF--FPKSPDFKEFPFMWFHDEIQKNLPQELDF EAEARNGERFRRLFG---DIPDLTIPKMY . |||| |. |..| . . | .|. . YNEARNAEKCRQMFKKFKHFDFLYVPRIH |
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| Kinase | ABC1-F_a.AA | ABC1-A | 147-186 | 55 | 1.3e-10 | 33.13 | In-house | 4-42 (216) | Show / Hide |
Range on Protein: 147-186 Range on HMM: 4-42/216 Sequence Identity: 55% (22 aa) APVAAASLGQVYQARLRPSGDTVAVKVQRPGVKATISLDI | |.|| ||| ||.|. .| ||||.| |||. | || MPFACASIGQVHQAVLK-DGREVAVKIQYPGVAESIDSDI |
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| Kinase | ABC1-F_a.AA | ABC1-A | 222-265 | 40 | 3.6e-09 | 28.14 | In-house | 77-120 (216) | Show / Hide |
Range on Protein: 222-265 Range on HMM: 77-120/216 Sequence Identity: 40% (18 aa) DYEAEARNGERFRRLFGDIPDLTIPKMYKELSSQRVLIMEWVEG ||. ||| || | | |. ..|. .|... ||| || ..| DYQREARCMQKFRQLLKDWPFFYVPHVIDEYCTDRVLTMELMYG |
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