Gene ABC1-F_e (S.moellendorffii)
ABC1-F_e
Species: S.moellendorffii
Alias: ABC1-F_e
External Links:
Annotation:
Sequence
| Name | Sequence Type | Origin | Length | Description | Download |
|---|---|---|---|---|---|
| ABC1-F_e.AA | Protein | None | 727 | None | Fasta, JSON |
| ABC1-F_e.NA | RNA | None | 2184 | None | Fasta, JSON |
Protein domains of ABC1-F_e.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
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| Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
|---|---|---|---|---|---|---|---|---|---|
| ABC1 | ABC1-F_e.AA | ABC1 | 201-320 | 30 | 3.8e-35 | 120.46 | Pfam | 1-126 (126) | Show / Hide |
Range on Protein: 201-320 Range on HMM: 1-126/126 Sequence Identity: 30% (38 aa) SELGARLEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLIDKYVDVV--TT-NVVALLDEFASRVYQELNYVQE .|||. .|...... . |.||||..||..|.|.. || ||||||.||..... .|. ..| . ...... . . ....|||......||.| .| EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE GFNAKKFMELYGDR---VDVKVPSIC . |...| |. . .|.|| . AKNMERFRENFRHWHRQPWVYVPKVY |
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| Kinase | ABC1-F_e.AA | ABC1-B | 201-320 | 31 | 5.5e-21 | 73.28 | In-house | 1-125 (125) | Show / Hide |
Range on Protein: 201-320 Range on HMM: 1-125/125 Sequence Identity: 31% (40 aa) SELGARLEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLIDKYV----DVVTTNVVALLDEFASRVYQELNYVQ . || |||.| . |.||||| || .|.| || |||||| | . ...| .... . .. | | . ...||. . .|||. KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHD-GETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYN EGFNAKKFMELYG---DRVDVKVPSIC |. ||.| .. .. ..|| | EARNAEKCRQMFKKFKHFDFLYVPRIH |
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| Kinase | ABC1-F_e.AA | ABC1 | 201-267 | 41 | 3.8e-19 | 69.95 | In-house | 1-65 (123) | Show / Hide |
Range on Protein: 201-267 Range on HMM: 1-65/123 Sequence Identity: 41% (28 aa) SELGARLEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLID ..|| ||| |. . |.||||..|| .|.|.. |. |||||| ||... |. | .... | .. | QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKD-GQTVAVKVQHPGVREQIHYDINNMEMVVKMCD |
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| Kinase | ABC1-F_e.AA | ABC1-A | 207-252 | 45 | 1.3e-11 | 36.72 | In-house | 1-38 (216) | Show / Hide |
Range on Protein: 207-252 Range on HMM: 1-38/216 Sequence Identity: 45% (21 aa) LEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAI .|.. | |.|| ||| .|||.. | ||||.| ||.|. | FEEM-------PFACASIGQVHQAVLKD-GREVAVKIQYPGVAESI |
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| Kinase | ABC1-F_e.AA | MST | 223-243 | 52 | 6e-06 | 14.91 | In-house | 11-31 (254) | Show / Hide |
Range on Protein: 223-243 Range on HMM: 11-31/254 Sequence Identity: 52% (11 aa) SLGQVYKAVLRSTGEVVAVKV | |.||||. ..||..||.|. SYGSVYKAIHKQTGKIVAIKM |
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| Kinase | ABC1-F_e.AA | APH | 374-434 | 20 | 6e-06 | 21.08 | Pfam | 174-248 (248) | Show / Hide |
Range on Protein: 374-434 Range on HMM: 174-248/248 Sequence Identity: 20% (15 aa) HADPHPGNLLAT--PE-GKL-AFIDFGMMSDTPPQARFAIIG-H-----VVHMVNRDYEAMA----RDYYALDFL |.| ||||.. . |. |.. ..||.... .| . .|.. | . .| . .|. ..... HGDFHPGNVMWDPRPDGGRVTGVIDWDDACWGDPHYDLAMCWWHWWCRWFWPEWRDAYGRAYCRHDPDWHRMRWW |
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| Kinase | ABC1-F_e.AA | ABC1 | 280-320 | 27 | 3e-05 | 17.79 | In-house | 81-123 (123) | Show / Hide |
Range on Protein: 280-320 Range on HMM: 81-123/123 Sequence Identity: 27% (12 aa) LLDEFASRVYQELNYVQEGFNAKKFMELYG--DRVDVKVPSIC ..||| . ..|... |. ||.|. .| .. ...|| | FVDEFQKELPWECDFNNEARNAEKCRQLFKKFHWPFFYVPRIH |
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| Kinase | ABC1-F_e.AA | YSK | 223-243 | 47 | 7.9e-05 | 10.07 | In-house | 11-31 (257) | Show / Hide |
Range on Protein: 223-243 Range on HMM: 11-31/257 Sequence Identity: 47% (10 aa) SLGQVYKAVLRSTGEVVAVKV | | |||.. . |..|||.|. SFGEVYKGIDNRTQRVVAIKI |
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| Kinase | ABC1-F_e.AA | ABC1-A | 290-339 | 32 | 0.000109 | 12.45 | In-house | 74-123 (216) | Show / Hide |
Range on Protein: 290-339 Range on HMM: 74-123/216 Sequence Identity: 32% (16 aa) QELNYVQEGFNAKKFMELYGDRVDVKVPSICWDYTSVKVLTMEWIDGTKL .| .| | ..|| .| | .. || . |.. .||||| . |. . WECDYQREARCMQKFRQLLKDWPFFYVPHVIDEYCTDRVLTMELMYGFPI |
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| Kinase | ABC1-F_e.AA | S_TKc | 213-584 | 12 | 0.000255 | -113.57 | SMART | 1-231 (231) | Show / Hide |
Range on Protein: 213-584
Range on HMM: 1-231/231
Sequence Identity: 12% (50 aa)
SITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLIDKYVDVVTTNVVALLDEFASRVYQELNYVQEGFNAKKFMELYGDRV
.. . |.|||.. ..||..||.|. . ....|.. .. . . ||. .
YEILRKIGKGAFGKVYKCRHKKTGRIVAIKIIK----------------------------------------EHIRREIQILKK--HHPNIVKLYDVFQ
DVKVPSICWDYTSVKVLTMEWIDG--TKLSEQEVIESQG-------LNVLKMVDIGIQ--CSLRQLLEYGYFHADPHPGNLLATPEGKLAFIDFGMMSDT
| . . || .|| | . .|...| .. . | | | . . | | | | |.| . . .|||.
D-----------DHLYMVMEYCDGDLGDLFD--YIKKRGRHGLRFPFPE-HARFYMYQICCALEYCHSHGIIHRDLKPENILLDE--HIKICDFGLARQL
PPQARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVSPIVPALKSFFDDVLDATVSELNFKT-IVD--GLGAVLYQYPFDGTYLLDCKLASLMFLFS
. ..| | | . . .| .| .|| | . . .. .|
------------------TTFCGTPWYMAPEVL----------------------------GYGKCKCDWWSCGCILYEMLC-GYPPFP----QMQMMFK
LFLFSVPPYYALILRSLTVLEGLALYTDPNFKVLAAAYPYFAKRLLTDPNPYLRDALVELLFKDGSFRWQRLENLL-VQGRKSSDFV
. . | ..| . .| || . |. | | . |. ..
KIG----------------------------------------------SPEAKDFIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF
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| Kinase | ABC1-F_e.AA | RAD53 | 225-242 | 38 | 0.000348 | 7.79 | In-house | 13-30 (305) | Show / Hide |
Range on Protein: 225-242 Range on HMM: 13-30/305 Sequence Identity: 38% (7 aa) GQVYKAVLRSTGEVVAVK |.|..|. ..|...||.| GTVKLAYEKKTCQKVAIK |
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| Kinase | ABC1-F_e.AA | STE11 | 225-242 | 55 | 0.000676 | 10.31 | In-house | 13-30 (303) | Show / Hide |
Range on Protein: 225-242 Range on HMM: 13-30/303 Sequence Identity: 55% (10 aa) GQVYKAVLRSTGEVVAVK |.|||.. .|||..||| GTVYKCMNVDTGELMAVK |
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| Kinase | ABC1-F_e.AA | LISK | 225-242 | 55 | 0.000862 | 7.97 | In-house | 8-25 (296) | Show / Hide |
Range on Protein: 225-242 Range on HMM: 8-25/296 Sequence Identity: 55% (10 aa) GQVYKAVLRSTGEVVAVK |.||| .| ||.|.|.| GKVYKGTHRQTGQVMAIK |
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| Kinase | ABC1-F_e.AA | CRK7 | 225-242 | 66 | 0.000887 | 8.68 | In-house | 13-30 (343) | Show / Hide |
Range on Protein: 225-242 Range on HMM: 13-30/343 Sequence Identity: 66% (12 aa) GQVYKAVLRSTGEVVAVK ||||||. .||| || | GQVYKAKNKHTGEMVALK |
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