Gene ABC1-F_c (S.moellendorffii)

ABC1-F_c

Species: S.moellendorffii
Alias: ABC1-F_c
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-F

Sequence

Name Sequence Type Origin Length Description Download
ABC1-F_c.AA Protein None 588 None Fasta, JSON
ABC1-F_c.NA RNA None 1764 None Fasta, JSON

Protein domain

Protein domains of ABC1-F_c.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-F_c.AA ABC1 129-248 39 1.1e-45 155.95 Pfam 1-126 (126) Show / Hide 
Range on Protein: 129-248
Range on HMM: 1-126/126
Sequence Identity: 39% (50 aa)

SDLNMPLEKAFRKISAQPVAAASLGQVYRATLLS-GEEVAVKVQRPGIEPIIYRDLFLFRTLASFLNGISTKK--LGCNAELIVDEFGEKLLEELDYTLE
..|..|.|. |. .. .|.||||..||.||.| . |||||||||.||... . ||. ..| .|  .. ..  .  .. . . ||||| . | .||||..|
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE

ARNLEDFYKNFKND---LTVKIPLVY
|.| | | .||...     |..| ||
AKNMERFRENFRHWHRQPWVYVPKVY
Kinase ABC1-F_c.AA ABC1 129-189 40 2e-13 49.31 In-house 1-60 (123) Show / Hide 
Range on Protein: 129-189
Range on HMM: 1-60/123
Sequence Identity: 40% (25 aa)

SDLNMPLEKAFRKISAQPVAAASLGQVYRATLLSGEEVAVKVQRPGIEPIIYRDLFLFRTL
.||  . |  |   . .|.||||..|| || | .|..|||||| ||.   |  |... ...
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVREQIHYDINNMEMV
Kinase ABC1-F_c.AA ABC1-B 129-189 40 2.7e-12 41.7 In-house 1-60 (125) Show / Hide 
Range on Protein: 129-189
Range on HMM: 1-60/125
Sequence Identity: 40% (25 aa)

SDLNMPLEKAFRKISAQPVAAASLGQVYRATLLSGEEVAVKVQRPGIEPIIYRDLFLFRTL
.||  . |  |   . .|.||||| || || |  ||.|||||| | .   .  |... ...
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRKQFHYDMMMMELF
Kinase ABC1-F_c.AA ABC1-A 145-175 58 2.2e-11 35.85 In-house 4-34 (216) Show / Hide 
Range on Protein: 145-175
Range on HMM: 4-34/216
Sequence Identity: 58% (18 aa)

QPVAAASLGQVYRATLLSGEEVAVKVQRPGI
 | |.|| ||| .| | .| |||||.| ||.
MPFACASIGQVHQAVLKDGREVAVKIQYPGV
Kinase ABC1-F_c.AA ABC1 208-248 34 2.2e-10 37.59 In-house 81-123 (123) Show / Hide 
Range on Protein: 208-248
Range on HMM: 81-123/123
Sequence Identity: 34% (15 aa)

IVDEFGEKLLEELDYTLEARNLEDFYKNFK--NDLTVKIPLVY
.|||| . | .|.|.. ||||.| .. .||  ..  ...| ..
FVDEFQKELPWECDFNNEARNAEKCRQLFKKFHWPFFYVPRIH
Kinase ABC1-F_c.AA ABC1-C 166-258 36 1.2e-09 25.88 In-house 1-92 (307) Show / Hide 
Range on Protein: 166-258
Range on HMM: 1-92/307
Sequence Identity: 36% (34 aa)

VAVKVQRPGIEPIIYRDLFLFRTLASFLNGISTKKLGCNAELIVDEFGEKLLEELDYTLEARNLEDFYKNFKNDLTVKIPLVYKSFSGSRVLV
|||||  ||.   .  || | .  .  |  .   |     | ||.||   .   .|   || ||| |  ||.|   || |   . |    |||
VAVKVLHPGLLAQVHMDLLLMKIGSRVLGVLPGIKWLSLPE-IVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLV
Kinase ABC1-F_c.AA ABC1-A 216-264 34 2.8e-05 14.54 In-house 72-120 (216) Show / Hide 
Range on Protein: 216-264
Range on HMM: 72-120/216
Sequence Identity: 34% (17 aa)

LLEELDYTLEARNLEDFYKNFKNDLTVKIPLVYKSFSGSRVLVMEWIDG
| .| ||..||| .  |.   |..  . .| | . .. .||| || . |
LHWECDYQREARCMQKFRQLLKDWPFFYVPHVIDEYCTDRVLTMELMYG
Kinase ABC1-F_c.AA ABC1-B 209-248 32 0.00012 13.89 In-house 83-125 (125) Show / Hide 
Range on Protein: 209-248
Range on HMM: 83-125/125
Sequence Identity: 32% (14 aa)

VDEFGEKLLEELDYTLEARNLEDFYKNFK---NDLTVKIPLVY
.||. . |..||| . |||| |     ||   .   ...| ..
HDEIQKNLPQELDFYNEARNAEKCRQMFKKFKHFDFLYVPRIH