Gene ABC1-G (S.moellendorffii)

ABC1-G

Species: S.moellendorffii
Alias: ABC1-G
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-G

Sequence

Name Sequence Type Origin Length Description Download
ABC1-G.AA Protein None 610 None Fasta, JSON
ABC1-G.NA RNA None 1833 None Fasta, JSON

Protein domain

Protein domains of ABC1-G.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-G.AA ABC1 85-203 40 1.7e-41 141.78 Pfam 1-126 (126) Show / Hide 
Range on Protein: 85-203
Range on HMM: 1-126/126
Sequence Identity: 40% (51 aa)

QELGRPISEVFSYISEEPVAAASLGQVYRGRTRD-GQDVAVKVQRPNIFYSVARDVYILRLGLGLVRMVAGI----NSDLSVFADEVGKGLYGELDYRLE
.|||.|..|.|. ..|||.||||..||.|.|..| |..||||||.|..  .. ||.|..|... .|. .       . ||   .||  | |. |||||.|
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE

AQNASAFALALTPKL---PFVVVPRVL
|.|.. |.  .  ..   |.| ||.| 
AKNMERFR-ENFRHWHRQPWVYVPKVY
Kinase ABC1-G.AA ABC1 85-203 34 1.1e-25 91.71 In-house 1-123 (123) Show / Hide 
Range on Protein: 85-203
Range on HMM: 1-123/123
Sequence Identity: 34% (43 aa)

QELGRPISEVFSYISEEPVAAASLGQVYRGRTRDGQDVAVKVQRPNIFYSVARDVYILRLGLGLVRMVAGI----NSDLSVFADEVGKGLYGELDYRLEA
|.|| .. .|||  .|.|.||||..|| |.. .||| |||||| |..  ..  |.  ..... .. .. .     .  |. | ||  | |. |.|.. ||
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNEA

QNASAFALALT-PKLPFVVVPRVL
.||  ..  .   . ||..|||..
RNAEKCRQLFKKFHWPFFYVPRIH
Kinase ABC1-G.AA ABC1-B 85-203 33 2.1e-18 63.9 In-house 1-125 (125) Show / Hide 
Range on Protein: 85-203
Range on HMM: 1-125/125
Sequence Identity: 33% (42 aa)

QELGRPISEVFSYISEEPVAAASLGQVYRGRTRDGQDVAVKVQRPNIFYSVARDVYILRLGLGLVRMVAG-----INSDLSVFADEVGKGLYGELDYRLE
. || .| .|||  ...|.||||| || |    ||. |||||| |..  .   |.  ..| . ..  .        .  .. | ||  | |. |||   |
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYNE

AQNASAFALALT--PKLPFVVVPRVL
| ||   .  .    ...|..|||. 
ARNAEKCRQMFKKFKHFDFLYVPRIH
Kinase ABC1-G.AA ABC1-A 98-127 50 2.9e-11 35.47 In-house 1-30 (216) Show / Hide 
Range on Protein: 98-127
Range on HMM: 1-30/216
Sequence Identity: 50% (15 aa)

ISEEPVAAASLGQVYRGRTRDGQDVAVKVQ
  | | |.|| ||| ... .||. ||||.|
FEEMPFACASIGQVHQAVLKDGREVAVKIQ
Kinase ABC1-G.AA Worm3 98-128 45 3e-05 11.03 In-house 2-32 (308) Show / Hide 
Range on Protein: 98-128
Range on HMM: 2-32/308
Sequence Identity: 45% (14 aa)

ISEEPVAAASLGQVYRGRTRDGQDVAVKVQR
  .| .|     |||||||  |  ||||  .
YNDEFMAKGAYSQVYRGRTESGRLVAVKTAC
Kinase ABC1-G.AA ABC1-A 175-224 38 0.000117 12.34 In-house 77-124 (216) Show / Hide 
Range on Protein: 175-224
Range on HMM: 77-124/216
Sequence Identity: 38% (19 aa)

DYRLEAQNASAFALALTPKLPFVVVPRVLRHLTTKKVMTMEWISGTRPVD
||..||  .  |  .|    ||. ||.|   ..| .|.||| ..|. |.|
DYQREARCMQKFR-QLLKDWPFFYVPHVIDEYCTDRVLTMELMYGF-PID