Gene CAMK1c-S1_q (S.moellendorffii)

CAMK1c-S1_q

Species: S.moellendorffii
Alias: CAMK1c-S1_q
External Links:
Annotation:

Classification

Group: CAMK
Family: CAMK1
Subfamily: CAMK1c

Sequence

Name Sequence Type Origin Length Description Download
CAMK1c-S1_q.AA Protein None 872 None Fasta, JSON
CAMK1c-S1_q.NA RNA None 2619 None Fasta, JSON
CAMK1c-S1_q.kin_dom Protein Kinase Domain None 28 None Fasta, JSON

Protein domain

Protein domains of CAMK1c-S1_q.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase CAMK1c-S1_q.AA CAMK1 29-57 55 9.6e-15 39.22 In-house 248-276 (276) Show / Hide 
Range on Protein: 29-57
Range on HMM: 248-276/276
Sequence Identity: 55% (16 aa)

LAKDLMLGMLNLDKKKRLTAAQILEHPWI
.|||.  .||..| |||.|..|.|.||||
EAKDFIKHMLEVDPKKRYTCEQCLNHPWI
Kinase CAMK1c-S1_q.AA DCAMKL 23-57 48 1.2e-14 41.4 In-house 245-279 (279) Show / Hide 
Range on Protein: 23-57
Range on HMM: 245-279/279
Sequence Identity: 48% (17 aa)

WSRVPVLAKDLMLGMLNLDKKKRLTAAQILEHPWI
|. .   ||||   ||. |..|| || ||..|||.
WDNISDSAKDLISHMLQVDPEKRYTAEQIMQHPWV
Kinase CAMK1c-S1_q.AA Aur 24-57 47 4.4e-14 33.05 In-house 224-257 (257) Show / Hide 
Range on Protein: 24-57
Range on HMM: 224-257/257
Sequence Identity: 47% (16 aa)

SRVPVLAKDLMLGMLNLDKKKRLTAAQILEHPWI
| ..  ||||. . |  | |.|.| .||..||||
SHISKEAKDLISKILQHDPKQRMTLDQIMNHPWI
Kinase CAMK1c-S1_q.AA CAMK 21-57 25 6.1e-14 40.6 In-house 366-425 (425) Show / Hide 
Range on Protein: 21-57
Range on HMM: 366-425/425
Sequence Identity: 25% (15 aa)

FDWSRVPV-----------------------LAKDLMLGMLNLDKKKRLTAAQILEHPWI
|... ..                         .|||  .||. | .||.|..|.|.|||.
FPPPYFSPISCNYGPEWWDDISDEFHHFVSQECKDLIRKMLQVDPEKRMTIEQCLNHPWM
Kinase CAMK1c-S1_q.AA CDPK 22-57 47 3.2e-13 37.13 In-house 236-271 (271) Show / Hide 
Range on Protein: 22-57
Range on HMM: 236-271/271
Sequence Identity: 47% (17 aa)

DWSRVPVLAKDLMLGMLNLDKKKRLTAAQILEHPWI
.|. . . ||||   ||. | |||..|.|.|.|||.
EWDHISDEAKDLIRKMLCYDPKKRMSAQQALQHPWF
Kinase CAMK1c-S1_q.AA RAD53 22-57 44 1.1e-12 33.55 In-house 270-305 (305) Show / Hide 
Range on Protein: 22-57
Range on HMM: 270-305/305
Sequence Identity: 44% (16 aa)

DWSRVPVLAKDLMLGMLNLDKKKRLTAAQILEHPWI
.|.|.   ||||  .||..| .||.|....| |||.
YWDRISEEAKDLIKWMLCVDPEKRYTIDEALNHPWM
Kinase CAMK1c-S1_q.AA Ciliate-E2a 22-57 48 2.6e-12 32.59 In-house 239-275 (275) Show / Hide 
Range on Protein: 22-57
Range on HMM: 239-275/275
Sequence Identity: 48% (18 aa)

D-WSRVPVLAKDLMLGMLNLDKKKRLTAAQILEHPWI
. |. ..  .|||| .||. | |||.||.|.|.||| 
ECWEKCSKECKDLMKKMLEKDPKKRITAQQALNHPWF
Kinase CAMK1c-S1_q.AA Ciliate-A9 29-57 41 1e-11 23.29 In-house 364-392 (392) Show / Hide 
Range on Protein: 29-57
Range on HMM: 364-392/392
Sequence Identity: 41% (12 aa)

LAKDLMLGMLNLDKKKRLTAAQILEHPWI
.||.. . |.| .   | .|.| | ||||
NAKNFIQKMTNINPSNRYNAFQCLKHPWI
Kinase CAMK1c-S1_q.AA MAPKAPK 22-57 44 1.6e-11 31.51 In-house 257-292 (292) Show / Hide 
Range on Protein: 22-57
Range on HMM: 257-292/292
Sequence Identity: 44% (16 aa)

DWSRVPVLAKDLMLGMLNLDKKKRLTAAQILEHPWI
.|| .   ||||   .|. | ..|||..|...||||
EWSHISEEAKDLIRKLLRRDPTQRLTIEQVMNHPWI
Kinase CAMK1c-S1_q.AA AGC 22-57 30 2.1e-11 24.25 In-house 350-395 (395) Show / Hide 
Range on Protein: 22-57
Range on HMM: 350-395/395
Sequence Identity: 30% (14 aa)

DWSRVPVLAKDLMLGMLNLDKKKRLT----------AAQILEHPWI
... . . ||||. ..|. | .|||.          | .| .||| 
EDRWFSPEAKDLIKKLLCKDPEKRLGCGGNDFGDKGAEEIKNHPWF
Kinase CAMK1c-S1_q.AA Pkinase 30-57 53 2.2e-10 37.81 Pfam 266-293 (293) Show / Hide 
Range on Protein: 30-57
Range on HMM: 266-293/293
Sequence Identity: 53% (15 aa)

AKDLMLGMLNLDKKKRLTAAQILEHPWI
.||.. ..|..| |||.||.|||.|||.
CKDFIKWCLCKDPKKRPTAEQILQHPWF
HELICc CAMK1c-S1_q.AA HELICc 282-382 25 9.8e-14 52.88 SMART 1-86 (86) Show / Hide 
Range on Protein: 282-382
Range on HMM: 1-86/86
Sequence Identity: 25% (26 aa)

DRKKGILSSGL--SGVEIFVLHNSIDVDQSLEAMEAYHS-VRKVILATDVAESSITIPGASFVIDSCRCLEVFWNSKMKRDAPRIVWESSSQAEQRKGRT
|. .  |.. .  .|......| ... ..  |.||.  .  .||...||||| .|.||....||.                     . . .|. || ||.
DELAEYLKERFKWPGYKVARIHGGMPQEEREEIMERFRNGKIKVLVCTDVAERGIDIPNVDHVINYDM------------------PWNPAQYIQRIGRA

GRTC
||  
GRAG
Helicase_C CAMK1c-S1_q.AA Helicase_C 289-382 25 4.8e-12 45.96 Pfam 1-76 (76) Show / Hide 
Range on Protein: 289-382
Range on HMM: 1-76/76
Sequence Identity: 25% (24 aa)

SSGLSGVEIFVLHNSIDVDQSLEAMEAYHS-VRKVILATDVAESSITIPGASFVIDSCRCLEVFWNSKMKRDAPRIVWESSSQAEQRKGRTGRTC
     |......| ... .. .|.||.  .  .||...||||. .|.||....||.                     . . .|  || |||||  
FLR-PGYKVARIHGDMPQEEREEIMERFRNGKCKVLVCTDVAGRGIDIPDVNHVINYDM------------------PWNPEQYIQRIGRTGRAG
ZnF_C3H1 CAMK1c-S1_q.AA ZnF_C3H1 585-611 35 0.000177 22.12 SMART 1-31 (31) Show / Hide 
Range on Protein: 585-611
Range on HMM: 1-31/31
Sequence Identity: 35% (11 aa)

EDGEVQCVYF-RRG---FCAKGNGCEFSHSA
 .... | || |||   .| .|. | |.|. 
RYKTPPCKYFMRRGPPWYCPYGDRCKFAHPP
Zf-CCCH CAMK1c-S1_q.AA zf-CCCH 586-611 37 0.00031 18.02 Pfam 1-27 (27) Show / Hide 
Range on Protein: 586-611
Range on HMM: 1-27/27
Sequence Identity: 37% (10 aa)

DGEVQCVYFRR-GFCAKGNGCEFSHSA
 ... | ||.| |.|  |. | |.|. 
YKTELCRYFMRTGYCPYGDRCKFAHPQ
ZnF_C3H1 CAMK1c-S1_q.AA ZnF_C3H1 612-634 34 0.005827 13.07 SMART 6-31 (31) Show / Hide 
Range on Protein: 612-634
Range on HMM: 6-31/31
Sequence Identity: 34% (9 aa)

VCKFF-LSG--DGCRYGAHCRYKHDS
.||.| . |    |.||..|.. |. 
PCKYFMRRGPPWYCPYGDRCKFAHPP
Zf-CCCH CAMK1c-S1_q.AA zf-CCCH 613-634 31 0.026969 11.48 Pfam 6-27 (27) Show / Hide 
Range on Protein: 613-634
Range on HMM: 6-27/27
Sequence Identity: 31% (7 aa)

CKFFLSGDGCRYGAHCRYKHDS
|..|. .  |.||. |.. |. 
CRYFMRTGYCPYGDRCKFAHPQ